Tuesday, February 24, 2009

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Denitrification is a microbially facilitated process of dissimilatory nitrate reduction that may ultimately produce molecular nitrogen (N2) through a series of intermediate gaseous nitrogen oxide products. This respiratory process reduces oxidized forms of nitrogen in response to the oxidation of an electron donor such as organic matter. The preferred nitrogen electron acceptors in order of most to least thermodynamically favourable include: nitrate (NO3-), nitrite (NO2-), nitric oxide (NO), and nitrous oxide (N2O). In terms of the general nitrogen cycle, denitrification completes the cycle by returning N2 to the atmosphere. The process is performed primarily by heterotrophic bacteria (such as Paracoccus denitrificans and various pseudomonads), although autotrophic denitrifiers have also been identified (e.g.,Thiobacillus denitrificans). Denitrifiers are represented in all main phylogenetic groups. Generally several species of bacteria are involved in the complete reduction of nitrate to molecular nitrogen, and more than one enzymatic pathway have been identified in the reduction process.[1]

Denitrification takes place under special conditions in both terrestrial and marine ecosystems. In general, it occurs where oxygen, a more energetically favourable electron acceptor, is depleted, and bacteria respire nitrate as a substitute terminal electron acceptor. Due to the high concentration of oxygen in our atmosphere, denitrification only takes place in environments where oxygen consumption exceeds the rate of oxygen supply, such as in some soils and groundwater, wetlands, poorly ventilated corners of the ocean, and in seafloor sediments.

Denitrification generally proceeds through some combination of the following intermediate forms:

NO3-NO2-NON2ON2 gas

The complete denitrification process can be expressed as a redox reaction:

2NO3- + 10e- + 12H+ → N2 + 6H2O

This reaction shows a fractionation in isotope composition. Lighter isotopes of nitrogen are preferred in the reaction, leaving the heavier nitrogen isotopes in the residual matter. The process can cause delta-values of up to -40, where delta is a representation of the difference in isotopic composition. This can be used to identify denitrification processes in nature.

Denitrification is commonly used to remove nitrogen from sewage and municipal wastewater. It is also an instrumental process in wetlands and riparian zones for the removal of excess nitrate from groundwater resulting from excessive agricultural or residential fertiliser usage.

Direct reduction from nitrate to ammonium, a process known as dissimilatory nitrate reduction to ammonium or DNRA, is also possible for organisms that have the nrf-gene. This is less common than denitrification in most ecosystems as a means of nitrate reduction.

Reduction under anoxic conditions can also occur through process called anaerobic ammonia oxidation (Anammox), this reaction is expressed as the following:

NH4+ + NO2- → N2 + 2H2O

In some wastewater treatment plants, small amounts of methanol are added to the wastewater to provide a carbon source for the denitrification bacteria.


Sulfur is one of the constituents of many proteins, vitamins and hormones. It recycles as in other biogeochemical cycles.

The essential steps of the sulfur cycle are:

  • Mineralization of organic sulfur to the inorganic form, hydrogen sulfide: (H2S).
  • Oxidation of sulfide and elemental sulfur (S) and related compounds to sulfate (SO42–).
  • Reduction of sulfate to sulfide.
  • Microbial immobilization of the sulfur compounds and subsequent incorporation into the organic form of sulfur.

These are often termed as follows:

Assimilative sulfate reduction (see also sulfur assimilation) in which sulfate (SO42–) is reduced to organic sulfhydryl (otherwise known as thiol) groups (R–SH) by plants, fungi and various prokaryotes. The oxidation states of sulfur are +6 in sulfate and –2 in R–SH.
Desulfuration in which organic molecules containing sulfur can be desulfurated, producing hydrogen sulfide gas (H2S), oxidation state = –2. Note the similarity to deamination.
Oxidation of hydrogen sulfide produces elemental sulfur (So), oxidation state = 0. This reaction is done by the photosynthetic green and purple sulfur bacteria and some chemolithotrophs.
Further oxidation of elemental sulfur by sulfur oxidizers produces sulfate.
Dissimilative sulfur reduction in which elemental sulfur can be reduced to hydrogen sulfide.
Dissimilative sulfate reduction in which sulfate reducers generate hydrogen sulfide from sulfate.

Human impact on the sulfur cycle is primarily in the production of sulfur dioxide (SO2) from industry (e.g. burning coal) and the internal combustion engine. Sulfur dioxide can precipitate onto surfaces where it can be oxidized to sulfate in the soil (it is also toxic to some plants), reduced to sulfide in the atmosphere, or oxidized to sulfate in the atmosphere as sulfuric acid, a principal component of acid rain.

http://filebox.vt.edu/users/chagedor/biol_4684/Cycles/sulfur_cycle.gif

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Ammonification is a term used in biology to describe the process by which decomposers change nitrogen in detritus to ammonium (NH4+). [1]

Nitrification is the biological oxidation of ammonia with oxygen into nitrite followed by the oxidation of these nitrites into nitrates. Degradation of ammonia to nitrite is usually the rate limiting step of nitrification. Nitrification is an important step in the nitrogen cycle in soil. This process was discovered by the Russian microbiologist, Sergei Winogradsky.

The oxidation of ammonia into nitrite is performed by two groups of organisms, ammonia oxidizing bacteria and ammonia oxidizing archaea[1]. Ammonia oxidizing bacteria can be found among the β- and γ-proteobacteria [2]. In soils the most studied ammonia oxidizing bacteria belong to the genera Nitrosomonas and Nitrosococcus. Although in soils ammonia oxidation occurs by both bacteria and archaea, archaeal ammonia oxidizers dominate in both soils and marine environments[3][4], suggesting that Crenarchaeota may be greater contributors to ammonia oxidation in these environments. The second step (oxidation of nitrite into nitrate) is (mainly) done by bacteria of the genus Nitrobacter. Both steps are producing energy to be coupled to ATP synthesis. Nitrifying organisms are chemoautotrophs, and use carbon dioxide as their carbon source for growth.

Nitrification also plays an important role in the removal of nitrogen from municipal wastewater. The conventional removal is nitrification, followed by denitrification. The cost of this process resides mainly in aeration (bringing oxygen in the reactor) and the addition of an external carbon source (e.g. methanol) for the denitrification.

In most environments both organisms are found together, yielding nitrate as the final product. It is possible however to design systems in which selectively nitrite is formed (the Sharon process).

Together with ammonification, nitrification forms a mineralization process which refers to the complete decomposition of organic material, with the release of available nitrogen compounds. This replenishes the nitrogen cycle

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The nitrogen cycle is the biogeochemical cycle that describes the transformations of nitrogen and nitrogen-containing compounds in nature. It is a cycle which includes gaseous components.

Earth's atmosphere is about 78% nitrogen, making it the largest pool of nitrogen. Nitrogen is essential for many biological processes; it is crucial for any life here on Earth. It is in all amino acids, is incorporated into proteins, and is present in the bases that make up nucleic acids, such as DNA and RNA. In plants, much of the nitrogen is used in chlorophyll molecules which are essential for photosynthesis and further growth.[1]

Processing, or fixation, is necessary to convert gaseous nitrogen into forms usable by living organisms. Some fixation occurs in lightning strikes, but most fixation is done by free-living or symbiotic bacteria. These bacteria have the nitrogenase enzyme that combines gaseous nitrogen with hydrogen to produce ammonia, which is then further converted by the bacteria to make its own organic compounds. Some nitrogen fixing bacteria, such as Rhizobium, live in the root nodules of legumes (such as peas or beans). Here they form a mutualistic relationship with the plant, producing ammonia in exchange for carbohydrates. Nutrient-poor soils can be planted with legumes to enrich them with nitrogen. A few other plants can form such symbioses. Nowadays, a very considerable portion of nitrogen is fixated in ammonia chemical plants.

Other plants get nitrogen from the soil, and by absorption of their roots in the form of either nitrate ions or ammonium ions. All nitrogen obtained by animals can be traced back to the eating of plants at some stage of the food chain.

Due to their very high solubility, nitrates can enter groundwater. Elevated nitrate in groundwater is a concern for drinking water use because nitrate can interfere with blood-oxygen levels in infants and cause methemoglobinemia or blue-baby syndrome.[2] Where groundwater recharges stream flow, nitrate-enriched groundwater can contribute to eutrophication, a process leading to high algal, especially blue-green algal populations and the death of aquatic life due to excessive demand for oxygen. While not directly toxic to fish life like ammonia, nitrate can have indirect effects on fish if it contributes to this eutrophication. Nitrogen has contributed to severe eutrophication problems in some water bodies. As of 2006, the application of nitrogen fertilizer is being increasingly controlled in Britain and the United States. This is occurring along the same lines as control of phosphorus fertilizer, restriction of which is normally considered essential to the recovery of eutrophied waterbodies.

Ammonia is highly toxic to fish and the water discharge level of ammonia from wastewater treatment plants must often be closely monitored. To prevent loss of fish, nitrification prior to discharge is often desirable. Land application can be an attractive alternative to the mechanical aeration needed for nitrification.

During anaerobic (low oxygen) conditions, denitrification by bacteria occurs. This results in nitrates being converted to nitrogen gases (NO, N2O, N2) and returned to the atmosphere. Nitrate can also be reduced to nitrite and subsequently combine with ammonium in the anammox process, which also results in the production of dinitrogen gas.

The Processes of the nitrogen cycle

[edit] Nitrogen fixation

Main article: Nitrogen fixation

[edit] Conversion of N2

The conversion of nitrogen (N2) from the atmosphere into a form readily available to plants and hence to animals and humans is an important step in the nitrogen cycle, that determines the supply of this essential nutrient. There are four ways to convert N2 (atmospheric nitrogen gas) into more chemically reactive forms:[1]

  1. Biological fixation: some symbiotic bacteria (most often associated with leguminous plants) and some free-living bacteria are able to fix nitrogen as organic nitrogen. An example of mutualistic nitrogen fixing bacteria are the Rhizobium bacteria, which live in legume root nodules. These species are diazotrophs. An example of the free-living bacteria is Azotobacter.
  2. Industrial N-fixation : Under great pressure, at a temperature of 600 C, and with the use of a catalyst, atomospheric nitrogen and hydrogen (usually derived from natural gas or petroleum) can be combined to form ammonia (NH3). In the Haber-Bosch process, N2 is converted together with hydrogen gas (H2) into ammonia (NH3) which is used to make fertilizer and explosives.
  3. Combustion of fossil fuels : automobile engines and thermal power plants, which release various nitrogen oxides (NOx).
  4. Other processes : Additionally, the formation of NO from N2 and O2 due to photons and especially lightning, are important for atmospheric chemistry, but not for terrestrial or aquatic nitrogen turnover.

[edit] Assimilation

Plants can absorb nitrate or ammonium ions from the soil via their root hairs. If nitrate is absorbed, it is first reduced to nitrite ions and then ammonium ions for incorporation into amino acids, intense nucleic acids, and chlorophyll.[1] In plants which have a mutualistic relationship with rhizobia, some nitrogen is assimilated in the form of ammonium ions directly from the nodules. Animals, fungi, and other heterotrophic organisms absorb nitrogen as amino acids, nucleotides and other small organic molecules.

[edit] Ammonification

When a plant or animal dies, or an animal excretes, the initial form of nitrogen is organic. Bacteria, or in some cases, fungi, convert the organic nitrogen within the remains back into ammonia, a process called ammonification or mineralization. Enzymes Involved:

  • GS: Gln Synthetase (Cytosolic & PLastid)
  • GOGAT: Glu 2-oxoglutarate aminotransferase (Ferredoxin & NADH dependent)
  • GDH: Glu Dehydrogenase:
    • Minor Role in ammonium assimilation.
    • Important in amino acid catabolism.

[edit] Nitrification

Main article: Nitrification

The conversion of ammonia to nitrates is performed primarily by soil-living bacteria and other nitrifying bacteria. The primary stage of nitrification, the oxidation of ammonia (NH3) is performed by bacteria such as the Nitrosomonas species, which converts ammonia to nitrites (NO2-). Other bacterial species, such as the Nitrobacter, are responsible for the oxidation of the nitrites into nitrates (NO3-).[1].It is important for the nitrites to be converted to nitrates because accumulated nitrites are toxic to plant life.

[edit] Denitrification

Main article: Denitrification

Denitrification is the reduction of nitrates back into the largely inert nitrogen gas (N2), completing the nitrogen cycle. This process is performed by bacterial species such as Pseudomonas and Clostridium in anaerobic conditions.[1] They use the nitrate as an electron acceptor in the place of oxygen during respiration. These facultatively anaerobic bacteria can also live in aerobic conditions.

[edit] Anaerobic ammonium oxidation

Main article: Anammox

In this biological process, nitrite and ammonium are converted directly into dinitrogen gas. This process makes up a major proportion of dinitrogen conversion in the oceans.

[edit] Human influences on the nitrogen cycle

As a result of extensive cultivation of legumes (particularly soy, alfalfa, and clover), growing use of the Haber-Bosch process in the creation of chemical fertilizers, and pollution emitted by vehicles and industrial plants, human beings have more than doubled the annual transfer of nitrogen into biologically available forms.[2] In addition, humans have significantly contributed to the transfer of nitrogen trace gases from Earth to the atmosphere, and from the land to aquatic systems.

N2O has risen in the atmosphere as a result of agricultural fertilization, biomass burning, cattle and feedlots, and other industrial sources.[3] N2O has deleterious effects in the stratosphere, where it breaks down and acts as a catalyst in the destruction of atmospheric ozone. Ammonia (NH3) in the atmosphere has tripled as the result of human activities. It is a reactant in the atmosphere, where it acts as an aerosol, decreasing air quality and clinging on to water droplets, eventually resulting in acid rain. Fossil fuel combustion has contributed to a 6 or 7 fold increase in NOx flux to the atmosphere. NOx actively alters atmospheric chemistry, and is a precursor of tropospheric (lower atmosphere) ozone production, which contributes to smog, acid rain, and increases nitrogen inputs to ecosystems.[1] Ecosystem processes can increase with nitrogen fertilization, but anthropogenic input can also result in nitrogen saturation, which weakens productivity and can kill plants.[2] Decreases in biodiversity can also result if higher nitrogen availability increases nitrogen-demanding grasses, causing a degradation of nitrogen-poor, species diverse heathlands.[4]

[edit] Wastewater

Onsite sewage facilities such as septic tanks and holding tanks release large amounts of nitrogen into the environment by discharging through a drainfield into the ground. Microbial activity consumes the nitrogen and other contaminants in the wastewater. However, in certain areas the soil is unsuitable to handle some or all of the wastewater, and as a result, the wastewater with the contaminants enters the aquifers. These contaminants accumulate and eventually end up in drinking water. One of the contaminants concerned about the most is nitrogen in the form of nitrates. A nitrate concentration of 10 ppm or 10 milligrams per liter is the current EPA limit for drinking water and typical household wastewater can produce a range of 20-85 ppm (milligrams per liter).

The health risk associated with drinking >10 ppm nitrogen water is the development of methemoglobinemia and has been found to cause blue baby syndrome. Several states have now started programs to introduce advanced wastewater treatment systems to the typical onsite sewage facilities. The result of these systems is an overall reduction of nitrogen, as well as other contaminants in the wastewater.

Additional, perhaps greater risks are posed by the increase of fixed nitrogen in aquatic systems leading to eutrophication and hypoxia, altering the chemistry and biology of both freshwater and seawater systems, and spurring the creation and growth of dead zones in the ocean.[5][6] The extent and effects of the human-caused doubling of biologically available nitrogen in the soils, waters, and air of the earth during the past century are still poorly understood.

File:Nitrogen Cycle.jpg

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The water cycle.

The water cycle, also known as the hydrologic cycle, describes the continuous movement of water on, above, and below the surface of the Earth. Since the water cycle is truly a "cycle," there is no beginning or end. Water can change states among liquid, vapor, and ice at various places in the water cycle. Although the balance of water on Earth remains fairly constant over time, individual water molecules can come and go.

Description

The sun, which drives the water cycle, heats water in the oceans. Water evaporates as vapor into the air. Ice and snow can sublimate directly into water vapor. Evapotranspiration is water transpired from plants and evaporated from the soil. Rising air currents take the vapor up into the atmosphere where cooler temperatures cause it to condense into clouds. Air currents move clouds around the globe, cloud particles collide, grow, and fall out of the sky as precipitation. Some precipitation falls as snow and can accumulate as ice caps and glaciers, which can store frozen water for thousands of years. Snowpacks can thaw and melt, and the melted water flows overland as snowmelt. Most precipitation falls back into the oceans or onto land, where the precipitation flows over the ground as surface runoff. A portion of runoff enters rivers in valleys in the landscape, with streamflow moving water towards the oceans. Runoff and groundwater, are stored as freshwater in lakes. Not all runoff flows into rivers. Much of it soaks into the ground as infiltration. Some water infiltrates deep into the ground and replenishes aquifers, which store huge amounts of freshwater for long periods of time. Some infiltration stays close to the land surface and can seep back into surface-water bodies (and the ocean) as groundwater discharge. Some groundwater finds openings in the land surface and emerges as freshwater springs. Over time, the water reenters the ocean, where our water cycle started.


[edit] Different Processes

Precipitation
Condensed water vapor that falls to the Earth's surface. Most precipitation occurs as rain, but also includes snow, hail, fog drip, graupel, and sleet.[1] Approximately 505,000 km3 (121,000 cu mi) of water fall as precipitation each year, 398,000 km3 (95,000 cu mi) of it over the oceans.[2]
Canopy interception
The precipitation that is intercepted by plant foliage and eventually evaporates back to the atmosphere rather than falling to the ground.
Snowmelt
The runoff produced by melting snow.
Runoff
The variety of ways by which water moves across the land. This includes both surface runoff and channel runoff. As it flows, the water may infiltrate into the ground, evaporate into the air, become stored in lakes or reservoirs, or be extracted for agricultural or other human uses.
Infiltration
The flow of water from the ground surface into the ground. Once infiltrated, the water becomes soil moisture or groundwater.[3]
Subsurface Flow
The flow of water underground, in the vadose zone and aquifers. Subsurface water may return to the surface (eg. as a spring or by being pumped) or eventually seep into the oceans. Water returns to the land surface at lower elevation than where it infiltrated, under the force of gravity or gravity induced pressures. Groundwater tends to move slowly, and is replenished slowly, so it can remain in aquifers for thousands of years.
Evaporation
The transformation of water from liquid to gas phases as it moves from the ground or bodies of water into the overlying atmosphere.[4] The source of energy for evaporation is primarily solar radiation. Evaporation often implicitly includes transpiration from plants, though together they are specifically referred to as evapotranspiration. Total annual evapotranspiration amounts to approximately 505,000 km3 (121,000 cu mi) of water, 434,000 km3 (104,000 cu mi) of which evaporates from the oceans.[2]
Sublimation
The state change directly from solid water (snow or ice) to water vapor.[5]
Advection
The movement of water — in solid, liquid, or vapour states — through the atmosphere. Without advection, water that evaporated over the oceans could not precipitate over land.[6]
Condensation
The transformation of water vapor to liquid water droplets in the air, producing clouds and fog.[7]

[edit] Residence times

Average reservoir residence times[8]
Reservoir Average residence time
Oceans 3,200 years
Glaciers 20 to 100 years
Seasonal snow cover 2 to 6 months
Soil moisture 1 to 2 months
Groundwater: shallow 100 to 200 years
Groundwater: deep 10,000 years
Lakes (see lake retention time) 50 to 100 years
Rivers 2 to 6 months
Atmosphere 9 days

The residence time of a reservoir within the hydrologic cycle is the average time a water molecule will spend in that reservoir (see adjacent table). It is a measure of the average age of the water in that reservoir.

Groundwater can spend over 10,000 years beneath Earth's surface before leaving. Particularly old groundwater is called fossil water. Water stored in the soil remains there very briefly, because it is spread thinly across the Earth, and is readily lost by evaporation, transpiration, stream flow, or groundwater recharge. After evaporating, the residence time in the atmosphere is about 9 days before condensing and falling to the Earth as precipitation.

In hydrology, residence times can be estimated in two ways. The more common method relies on the principle of conservation of mass and assumes the amount of water in a given reservoir is roughly constant. With this method, residence times are estimated by dividing the volume of the reservoir by the rate by which water either enters or exits the reservoir. Conceptually, this is equivalent to timing how long it would take the reservoir to become filled from empty if no water were to leave (or how long it would take the reservoir to empty from full if no water were to enter).

An alternative method to estimate residence times, which is gaining in popularity for dating groundwater, is the use of isotopic techniques. This is done in the subfield of isotope hydrology.

[edit] Changes over time

The water cycle describes the processes that drive the movement of water throughout the hydrosphere. However, much more water is "in storage" for long periods of time than is actually moving through the cycle. The storehouses for the vast majority of all water on Earth are the oceans. It is estimated that of the 332,500,000 mi3 (1,386,000,000 km3) of the world's water supply, about 321,000,000 mi3 (1,338,000,000 km3) is stored in oceans, or about 95%. It is also estimated that the oceans supply about 90% of the evaporated water that goes into the water cycle.[9]

During colder climatic periods more ice caps and glaciers form, and enough of the global water supply accumulates as ice to lessen the amounts in other parts of the water cycle. The reverse is true during warm periods. During the last ice age glaciers covered almost one-third of Earth's land mass, with the result being that the oceans were about 400 ft (122 m) lower than today. During the last global "warm spell," about 125,000 years ago, the seas were about 18 ft (5.5 m) higher than they are now. About three million years ago the oceans could have been up to 165 ft (50 m) higher.[9]

The scientific consensus expressed in the 2007 Intergovernmental Panel on Climate Change (IPCC) Summary for Policymakers[10] is for the water cycle to continue to intensify throughout the 21st century, though this does not mean that precipitation will increase in all regions. In subtropical land areas — places that are already relatively dry — precipitation is projected to decrease during the 21st century, increasing the probability of drought. The drying is projected to be strongest near the poleward margins of the subtropics (for example, the Mediterranean Basin, South Africa, southern Australia, and the Southwestern United States). Annual precipitation amounts are expected to increase in near-equatorial regions that tend to be wet in the present climate, and also at high latitudes. These large-scale patterns are present in nearly all of the climate model simulations conducted at several international research centers as part of the 4th Assessment of the IPCC.

Glacial retreat is also an example of a changing water cycle, where the supply of water to glaciers from precipitation cannot keep up with the loss of water from melting and sublimation. Glacial retreat since 1850 has been extensive.[11]

Human activities that alter the water cycle include:

[edit] Effects on climate

The water cycle is powered from solar energy. 86% of the global evaporation occurs from the oceans, reducing their temperature by evaporative cooling. Without the cooling effect of evaporation the greenhouse effect would lead to a much higher surface temperature of 67 °C (153 °F), and a warmer planet.[12]

[edit] Effects on biogeochemical cycling

While the water cycle is itself a biogeochemical cycle,[13] flow of water over and beneath the Earth is a key component of the cycling of other biogeochemicals. Runoff is responsible for almost all of the transport of eroded sediment and phosphorus[14] from land to waterbodies. The salinity of the oceans is derived from erosion and transport of dissolved salts from the land. Cultural eutrophication of lakes is primarily due to phosphorus, applied in excess to agricultural fields in fertilizers, and then transported overland and down rivers. Both runoff and groundwater flow play significant roles in transporting nitrogen from the land to waterbodies.[15] The dead zone at the outlet of the Mississippi River is a consequence of nitrates from fertilizer being carried off agricultural fields and funnelled down the river system to the Gulf of Mexico. Runoff also plays a part in the carbon cycle, again through the transport of eroded rock and soil.[16]

[edit] Bible

This process of Water Cycle was already known to even the people of the Biblical times, as we can see in the verses of Job 36:27,28[17] [18] Elihu while talking to Job makes known these scientific things from the wisdom of the spirit of God. Job 36: 27 For he maketh small the drops of water: they pour down rain according to the vapour thereof: 28 Which the clouds do drop and distil upon man abundantly.


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carbon dioxide-oxygen cycle

The flow of carbon dioxide and oxygen through Earth's ecosystems

illustration
This relates to the relationship between CO2-breathing plants and O2 breathing lifeforms. All oxygen-breathing lifeforms take in oxygen and exhale CO2. Plants take in the CO2, use it in their photosynthesis process, and in turn give off ["exhale"] oxygen.

In this cycle trees and plants let off oxygen and take in carbon dioxide. All living animals need oxygen to live. When people cut down trees we are loosing more and more oxygen. The carbon dioxide produced in cellular resperation is used in the photosynthesis, this is the oxygen - carbon dioxide cycle. that is what happens duing the carbon dioxide - oxygen cycle.

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For the film, see Predator (film)
Forms of the verb "predate" redirect here. Some uses of the verb "predate" are a misspelling for "pre-date", meaning "happen earlier than".

In ecology, predation describes a biological interaction where a predator (an organism that is hunting) feeds on its prey, the organism that is attacked.[1] Predators may or may not kill their prey prior to feeding on them, but the act of predation always results in the death of the prey.[2] The other main category of consumption is detritivory, the consumption of dead organic material (detritus). It can at times be difficult to separate the two feeding behaviors[1], for example where parasitic species prey on a host organism and then lay their eggs on it for their offspring to feed on its decaying corpse. The key characteristic of predation however is the predator's direct impact on the prey population. On the other hand, detritivores simply eat what is available and have no direct impact on the "donor" organism(s).

A juvenile Red-tailed Hawk eating a California Vole

Selective pressures imposed on one another has led to an evolutionary arms race between prey and predator, resulting in various antipredator adaptations.

Classification of predators

Sundew, Drosera with prey

The unifying theme in all classifications of predation is the predator lowering the fitness of its prey, or put another way, it reduces its prey's chances of survival, reproduction, or both. Ways of classifying predation surveyed here include grouping by trophic level or diet, by specialization, and by the nature of their interaction with prey.

[edit] Functional classification

Classification of predators by the extent to which they feed on and interact with their prey is one way ecologists may wish to categorize the different types of predation. Instead of focusing on what they eat, this system classifies predators by the way in which they eat, and the general nature of the interaction between predator and prey species. Two factors are considered here: How close the predator and prey are physically (in the latter two cases the term prey may be replaced with host). Additionally, whether or not the prey are directly killed by the predator is considered, with the first and last cases involving certain death.

[edit] True predation

Lion and cub eating a Cape Buffalo

A true predator is one which kills and eats another organism. Whereas other types of predator all harm their prey in some way, this form results in their certain death. Predators may hunt actively for prey, or sit and wait for prey to approach within striking distance, as in ambush predators. Some predators kill large prey and dismember or chew it prior to eating it, such as a jaguar, while others may eat their (usually much smaller) prey whole, as does a bottlenose dolphin or any snake, or a duck or stork swallowing a frog. Some predation entails venom which subdues a prey creature before the predator ingests the prey by killing, which the box jellyfish does, or disabling it, found in the behavior of the cone shell. In some cases the venom, as in rattlesnakes and some spiders, contributes to the digestion of the prey item even before the predator begins eating. In other cases, the prey organism may die in the mouth or digestive system of the predator. Baleen whales, for example, eat millions of microscopic plankton at once, the prey being broken down well after entering the whale. Seed predation is another form of true predation, as seeds represent potential organisms. Predators of this classification need not eat prey entirely, for example some predators cannot digest bones, while others can. Some may merely eat only part of an organism, as in grazing (see below), but still consistently cause its direct death.

[edit] Grazing

Main article: Grazing

Grazing organisms may also kill their prey species, but this is seldom the case. While some herbivores like zooplankton live on unicellular phytoplankton and have no choice but to kill their prey, many only eat a small part of the plant. Grazing livestock may pull some grass out at the roots, but most is simply grazed upon, allowing the plant to regrow once again. Kelp is frequently grazed in subtidal kelp forests, but regrows at the base of the blade continuously to cope with browsing pressure. Animals may also be 'grazed' upon; female mosquitos land on hosts briefly to gain sufficient proteins for the development of their offspring. Starfish may be grazed on, being capable of regenerating lost arms.

[edit] Parasitism

Main article: Parasitism

Parasites can at times be difficult to distinguish from grazers. Their feeding behavior is similar in many ways, however they are noted for their close association with their host species. While a grazing species such as an elephant may travel many kilometers in a single day, grazing on many plants in the process, parasites form very close associations with their hosts, usually having only one or at most a few in their lifetime. This close living arrangement may be described by the term symbiosis, 'living together,' but unlike mutualism the association significantly reduces the fitness of the host. Parasitic organisms range from the macroscopic mistletoe, a parasitic plant, to microscopic internal parasites such as cholera. Some species however have more loose associations with their hosts. Lepidoptera (butterfly and moth) larvae may feed parasitically on only a single plant, or they may graze on several nearby plants. It is therefore wise to treat this classification system as a continuum rather than four isolated forms.

[edit] Parasitoidism

Main article: Parasitoid

Parasitoids are organisms living in or on their host and feeding directly upon it, eventually leading to its death. They are much like parasites in their close symbiotic relationship with their host or hosts. Like the previous two classifications parasitoid predators do not kill their hosts instantly. However, unlike parasites, they are very similar to true predators in that the fate of their prey is quite inevitably death. A well known example of a parasitoids are the ichneumon wasps, solitary insects living a free life as an adult, then laying eggs on or in another species such as a caterpillar. Its larva(e) feed on the growing host causing it little harm at first, but soon devouring the internal organs until finally destroying the nervous system resulting in prey death. By this stage the young wasp(s) are developed sufficiently to move to the next stage in their life cycle. Though limited mainly to the insect order Hymenoptera, Diptera and Coleoptera parasitoids make up as much as 10% of all insect species.[3][4][5]

[edit] Degree of specialization

An opportunistic Alligator swims with a deer
Further information: Generalist and specialist species

Among predators there is a large degree of specialization. Many predators specialize in hunting only one species of prey. Others are more opportunistic and will kill and eat almost anything (examples: humans, leopards, and dogs). The specialists are usually particularly well suited to capturing their preferred prey. The prey in turn, are often equally suited to escape that predator. This is called an evolutionary arms race and tends to keep the populations of both species in equilibrium. Some predators specialize in certain classes of prey, not just single species. Almost all will switch to other prey (with varying degrees of success) when the preferred target is extremely scarce, and they may also resort to scavenging or a herbivorous diet if possible.[citation needed]

[edit] Trophic level

Mantis eating a bee.
Main article: Trophic dynamics

Predators are often another organism's prey, and likewise prey are often predators. Though blue jays prey on insects, they may in turn be prey for cats and snakes, which may themselves be the prey of hawks. One way of classifying predators is by trophic level. Organisms which feed on autotrophs, the producers of the trophic pyramid, are known as herbivores or primary consumers; those that feed on heterotrophs such as animals are known as secondary consumers. Secondary consumers are a type of carnivore, but there are also tertiary consumers eating these carnivores, quartary consumers eating them, and so forth. Because only a fraction of energy is passed on to the next level, this hierarchy of predation must end somewhere, and very seldom goes higher than five or six levels, and may go only as high as three trophic levels (for example, a lion that preys upon large herbivores such as wildebeest which in turn eat grasses). A predator at the top of any food chain (that is, one that is preyed upon by no organism) is called an apex predator; examples include the orca, sperm whale, anaconda, Komodo dragon, tiger, bald eagle, and Nile crocodile -- and even omnivorous humans and grizzly bears. An apex predator in one environment may not retain this position as a top predator if introduced to another habitat, such as a dog among alligators or a snapping turtle among jaguars; a predatory species introduced into an area where it faces no predators, such as a domestic cat or a pig in some insular environments, can become an apex predator by default.

Many organisms (of which humans are prime examples) eat from multiple levels of the food chain and thus make this classification problematic. A carnivore may eat both secondary and tertiary consumers, and its prey may itself be difficult to classify for similar reasons. Organisms showing both carnivory and herbivory are known as omnivores. Even such herbivores such as the giant panda may supplement their diet with meat. Scavenging of carrion provides a significant part of the diet of some of the most fearsome predators. Carnivorous plants would be very difficult to fit into this classification, producing their own food but also digesting anything that they may trap. Organisms which eat detritivores or parasites would also be difficult to classify by such a scheme.

[edit] Predation as competition

An alternative view offered by Richard Dawkins is of predation as a form of competition: the genes of both the predator and prey are competing for the body (or 'survival machine') of the prey organism.[6] This is best understood in the context of the gene centered view of evolution.

[edit] Ecological role

Predators may increase the biodiversity of communities by preventing a single species from becoming dominant. Such predators are known as keystone species and may have a profound influence on the balance of organisms in a particular ecosystem. Introduction or removal of this predator, or changes in its population density, can have drastic cascading effects on the equilibrium of many other populations in the ecosystem. For example, grazers of a grassland may prevent a single dominant species from taking over.[7]

The elimination of wolves from Yellowstone National Park had profound impacts on the trophic pyramid. Without predation, herbivores began to over-graze many woody brow species, affecting the area's plant populations. Additionally, wolves often kept animals from grazing in riparian areas, which protected beavers from having their food sources encroached upon. The removal of wolves had a direct effect on beaver populations, as their habitat became territory for grazing.[8] Furthermore, predation keeps hydrological features such as creeks and streams in normal working order. Increased browsing on willows lenr and conifers along Blacktail Creek due to a lack of predation resulted in channel incision because those species helped slow the water down and hold the soil in place.[8]

[edit] Adaptations and behavior

The act of predation can be broken down into a maximum of four stages: Detection of prey, attack, capture and finally consumption.[9] The relationship between predator and prey is one which is typically beneficial to the predator, and detrimental to the prey species. Sometimes, however, predation has indirect benefits to the prey species,[10] though the individuals preyed upon themselves do not benefit.[11] This means that, at each applicable stage, predator and prey species are in an evolutionary arms race to maximize their respective abilities to obtain food or avoid being eaten. This interaction has resulted in a vast array of adaptations in both groups.

Camouflage of the dead leaf mantis makes it less visible to both its predators and prey.

One adaptation helping both predators and prey avoid detection is camouflage, a form of crypsis where species have an appearance which helps them blend into the background. Camouflage consists of not only color, but also shape and pattern. The background upon which the organism is seen can be both its environment (e.g. the praying mantis to the right resembling dead leaves) other organisms (e.g. zebras' stripes blend in with each other in a herd, making it difficult for lions to focus on a single target). The more convincing camouflage is, the more likely it is that the organism will go unseen.

Mimicry in Automeris io.

Mimicry is a related phenomenon where an organism has a similar appearance to another species. One such example is the drone fly, which looks a lot like a bee, yet is completely harmless as it cannot sting at all. Another example of batesian mimicry is the io moth, (Automeris io), which has markings on its wings which resemble an owl's eyes. When an insectivorous predator disturbs the moth, it reveals its hind wings, temporarily startling the predator and giving it time to escape. Predators may also use mimicry to lure their prey, however. Female fireflies of the genus Photuris, for example, copy the light signals of other species, thereby attracting male fireflies which are then captured and eaten.[12]

[edit] Predator

A South China Tiger as the predator feeding on the blesbuck, the prey.

While successful predation results in a gain of energy, hunting invariably involves energetic costs as well. When hunger is not an issue, most predators will generally not seek to attack prey since the costs outweight the benefits. For instance, a large predatory fish like a shark that is well fed in an aquarium will typically ignore the smaller fish swimming around it (while the prey fish take advantage of the fact that the apex predator is apparently uninterested). Surplus killing represents a deviation from this type of behaviour. The treatment of consumption in terms of cost-benefit analysis is known as optimal foraging theory, and has been quite successful in the study of animal behavior. Costs and benefits are generally considered in energy gain per unit time, though other factors are also important, such as essential nutrients that have no caloric value but are necessary for survival and health.

Social Predation offers the possibility of predators to kill creatures larger than those that members of the species could overpower singly. Lions, hyenas, wolves, dholes, African wild dogs, and piranhas can kill large herbivores that single animals of the same species could never dispatch. Social predation allows some animals to organize hunts of creatures that would easily escape a single predator; thus chimpanzees can prey upon colubus monkeys, and harrier hawks can cut off all possible escapes for a doomed rabbit. Extreme specialization of roles is evident in some hunting that requires co-operation between predators of very different species: humans with the aid of falcons or dogs, or fishing with cormorants or dogs. Social predation is often very complex behavior, and not all social creatures (for example, domestic cats) perform it. Even without complex intelligence but instinct alone, some ant species can destroy much-larger creatures.

Size-selective predation involves predators preferring prey of a certain size. Large prey may prove troublesome for a predator, while small prey might prove hard to find and in any case provide less of a reward. This has led to a correlation between the size of predators and their prey.[13] Size may also act as a refuge for large prey, for example adult elephants are generally safe from predation by lions, but juveniles are vulnerable.[13]

It has been observed that well-fed predator animals in a lax captivity (for instance, pet or farm animals) will usually differentiate between putative prey animals who are familiar co-inhabitants in the same human area from wild ones outside the area. This interaction can range from peaceful coexistence to close companionship; motivation to ignore the predatory instinct may result from mutual advantage or fear of reprisal from human masters who have made clear that harming co-inhabitants will not be tolerated. Pet cats and pet mice, for example, may live together in the same human residence without incident as companions. Pet cats and pet dogs under human mastership often depend on each other for warmth, companionship, and even protection, particularly in rural areas.

[edit] Anti-predator adaptations

Antipredator adaptations have evolved in prey populations due to the selective pressures of predation over long periods of time.

[edit] Aggression

Predatory animals often use their usual methods of attacking prey to inflict or to threaten grievous injury to their own predators. The electric eel uses the same electrical current to kill prey and to defend itself against animals (anacondas, caimans, jaguars, egrets, cougars, giant otters, humans, and dogs) that ordinarily prey upon fish similar to an electric eel in size; the electric eel thus remains an apex predator in a predator-rich environment. Many non-predatory prey animals, such as a zebra, can give a strong kick that can maim or kill, while others charge with tusks or horns.

[edit] Mobbing behavior

Mobbing behavior occurs when a species turns the tables on their predator by cooperatively attacking or harassing it. This is most frequently seen in birds, though it is also known to occur in other social animals. For example, nesting gull colonies are widely seen to attack intruders, including humans. Costs of mobbing behavior include the risk of engaging with predators, as well as energy expended in the process, but it can aid the survival of members of a species. Mockingbirds can effectively force a cat or dog to seek something less troublesome through mobbing behavior. One mockingbird might fly in front of the cat or dog, enticing a common predator upon birds to lunge, while another pecks at the cat or dog from behind to inflict a sharp pain that forces the predator to hesitate when it encounters mockingbirds.

While mobbing has evolved independently in many species, it only tends to be present in those whose young are frequently preyed on, especially birds. It may complement cryptic behavior in the offspring themselves, such as camouflage and hiding. Mobbing calls may be made prior to or during engagement in harassment.

Mobbing behavior has functions beyond driving the predator away. Mobbing draws attention to the predator, making stealth attacks impossible. Mobbing also plays a critical role in the identification of predators and inter-generational learning about predator identification. Reintroduction of species is often unsuccessful because the established population lacks this cultural knowledge of how to identify local predators. Scientists are exploring ways to train populations to identify and respond to predators before releasing them into the wild. [14]

Mobbing can be an interspecies activity: it is common for birds to respond to mobbing calls of a different species. Many birds will show up at the sight of mobbing and watch and call, but not participate. It should also be noted that some species can be on both ends of a mobbing attack. Crows are frequently mobbed by smaller songbirds as they prey on eggs and young from these birds' nests, but these same crows will cooperate with smaller birds to drive away hawks or larger mammalian predators. On occasion, birds will mob animals that pose no threat.

Black-headed Gulls are one species which aggressively engages intruding predators, such as Carrion Crows. Experiments on this species by Hans Kruuk involved placing hen eggs at intervals from a nesting colony, and recording the percentage of successful predation events as well as the probability of the crow being subjected to mobbing.[15] The results showed decreasing mobbing with increased distance from the nest, which was correlated with increased predation success. Mobbing may function by reducing the predator's ability to locate nests, as predators cannot focus on locating eggs while they are under direct attack.

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Thomson's Gazelles exhibit stotting behavior.

A Thomson's Gazelle seeing a predator approach may start to run away, but then slow down and stot. Stotting is jumping into the air with the legs straight and stiff, and the white rear fully visible. Stotting is maladaptive for outrunning predators; evidence suggests that stotting signals an unprofitable chase. For example, cheetahs abandon more hunts when the gazelle stots, and in the event they do give chase, they are far less likely to make a kill.[16]

Aposematism, where organisms are brightly colored as a warning to predators, is the antithesis of camouflage. Some organisms pose a threat to their predators - for example they may be poisonous, or able to harm them physically. Aposematic coloring involves bright, easily recognizable and unique colors and patterns. Upon being harmed (e.g. stung) by their prey, the appearance in such an organism will be remembered as something to avoid.

[edit] Terrain Fear Factor

The "terrain fear factor" is an idea which assesses the risks associated with predator/prey encounters. This idea suggests that prey will change their usual habits to adjust to the terrain and its effect on the species' predation. For example, a species may forage in a terrain with a lower predation risk as opposed to one with high predation risk.[17]

[edit] Population dynamics

It is fairly clear that predators tend to lower the survival and fecundity of their prey, but on a higher level of organization, populations of predator and prey species also interact. It is obvious that predators depend on prey for survival, and this is reflected in predator populations being affected by changes in prey populations. It is not so obvious, however, that predators affect prey populations. Eating a prey organism may simply make room for another if the prey population is approaching its carrying capacity.

The population dynamics of predator-prey interactions can be modelled using the Lotka–Volterra equations. These provide a mathematical model for the cycling of predator and prey populations.

[edit] Evolution of predation

Predation appears to have become a major selection pressure shortly before the Cambrian period - around 550 million years ago - as evidenced by the almost simultaneous development of calcification in animals and algae,[18] and predation-avoiding burrowing. However, predators had been grazing on micro-organisms since at least 1,000 million years ago.[19][20][21][19][22]

[edit] Humans and predation

[edit] As predators

In much of the world, humans are the largest, best-organized, most cunning, and most powerful predators. The closest rival to humans in those characteristics in most of the world, the dog, is far more likely a collaborator than a competitor or a menace.

Humans are clever exploiters of tools from snares, clubs, spears, fishing gear, firearms to boats and motor vehicles in hunting other animals. Humans even use other animals (dogs, cormorants, and falcons) in hunting or fishing and such non-predatory animals as horses, camels, and elephants in getting approaches to prey.

Humans have reshaped huge expanses of the world as ranges and farms for the raising of livestock, poultry, and fish to be eaten as meat.

[edit] In conservation

Predators are an important consideration in matters relating to conservation. Introduced predators may prove too much for populations which have not coevolved with them, leading to possible extinction. This will depend largely on how well the prey species can adapt to the new species, and whether or not the predator can turn to alternative food sources when prey populations fall to minimal levels. If a predator can use an alternative prey instead, it may shift its diet towards that species in a behavior known as functional response, while still eating the last remaining prey organisms. On the other hand the prey species may be able to survive if the predator has no alternative prey - in this case its population will necessarily crash following the decline in prey, allowing some small proportion of prey to survive. Introduction of an alternative prey may well lead to the extinction of prey, as this constraint is removed.[clarification needed]

Predators are often the species endangered themselves, especially apex predators who are often in competition with humans. Competition for prey from other species could prove the end of a predator - if their ecological niche overlaps completely with that of another the competitive exclusion principle requires only one can survive. Loss of prey species may lead to coextinction of their predator. In addition, because predators are found in higher trophic levels, they are less abundant and much more vulnerable to extinction.

[edit] Biological pest control

Predators may be put to use in conservation efforts to control introduced species. Although the aim in this situation is to remove the introduced species entirely, keeping its abundance down is often the only possibility. Predators from its natural range may be introduced to control populations, though in some cases this has little effect, and may even cause unforeseen problems. Besides their use in conservation biology, predators are also important for controlling pests in agriculture. Natural predators are an environmentally friendly and sustainable way of reducing damage to crops, and are one alternative to the use of chemical agents such as pesticides.